miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5285 + 120659 90 24 -27.6 5' arm      3' arm
5282 + 118792 88 23 -21.9 5' arm      3' arm
5519 - 149318 87 25.5 -33.9 5' arm      3' arm
5294 + 132424 87 25.5 -33.9 5' arm      3' arm
5106 + 5869 87 19 -26.4 5' arm      3' arm
5108 + 8906 86 23 -32.7 5' arm      3' arm
5105 + 5750 88 23 -21 5' arm      3' arm
5107 + 8371 88 29 -26.4 5' arm      3' arm
5323 - 402 90 28.5 -26.9 5' arm      3' arm
5104 + 3570 89 23.5 -31.3 5' arm      3' arm
5510 - 145847 90 21 -21.9 5' arm      3' arm
5296 + 133057 89 19 -25.6 5' arm      3' arm
5290 + 126848 90 28.5 -26.9 5' arm      3' arm
5320 + 148863 82 26 -26.9 5' arm      3' arm
5321 + 149001 82 26 -28.8 5' arm      3' arm
5322 + 149372 87 20 -27.9 5' arm      3' arm
5317 + 146385 89 20 -30 5' arm      3' arm
5297 + 133185 88 19 -21.5 5' arm      3' arm
5518 - 148942 78 22.5 -32.5 5' arm      3' arm
5295 + 132800 78 22.5 -32.5 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.