miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5141 + 27068 88 19 -21.1 NP_044482 5' arm      3' arm
5151 + 33903 87 19 -21.3 NP_044484 5' arm      3' arm
5199 + 65691 88 19 -22.8 NP_044500 5' arm      3' arm
5307 + 138254 86 19 -29.3 NP_044534 5' arm      3' arm
5193 + 61525 89 19 -26.2 NP_044499 5' arm      3' arm
5154 + 35461 89 19 -19.5 NP_044487 5' arm      3' arm
5183 + 51429 86 19 -26.8 NP_044495 5' arm      3' arm
5106 + 5869 87 19 -26.4 5' arm      3' arm
5143 + 28355 83 19 -21.6 NP_044483 5' arm      3' arm
5148 + 32923 90 19 -25.9 NP_044486 5' arm      3' arm
5302 + 135801 86 19 -21.5 NP_044532 5' arm      3' arm
5202 + 68053 89 19 -28.62 NP_044502 5' arm      3' arm
5169 + 45459 89 19 -27.5 NP_044491 5' arm      3' arm
5516 - 148557 88 19 -21.5 5' arm      3' arm
5198 + 64673 86 19 -20.2 NP_044500 5' arm      3' arm
5220 + 79006 89 19 -22 NP_044506 5' arm      3' arm
5263 + 101590 88 19 -24.5 5' arm      3' arm
5114 + 11336 89 19 -22.4 NP_044472 5' arm      3' arm
5118 + 12829 88 19 -26 NP_044474 5' arm      3' arm
5297 + 133185 88 19 -21.5 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.