miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
5305	+	137297	89	19.5	-20.2	NP_044533		5' arm      3' arm
5286	+	120781	87	25	-20.2			5' arm      3' arm
5327	-	6469	87	25	-20.2			5' arm      3' arm
5460	-	105293	89	23	-20.3	NP_044518		5' arm      3' arm
5184	+	54080	90	20	-20.3	NP_044497		5' arm      3' arm
5511	-	146043	89	20	-20.3	NP_044540		5' arm      3' arm
5126	+	17505	87	21	-20.3	NP_044476		5' arm      3' arm
5262	+	101228	90	21	-20.4	NP_044516		5' arm      3' arm
5194	+	62415	90	21	-20.4			5' arm      3' arm
5256	+	98773	87	21	-20.4	NP_044515		5' arm      3' arm
5111	+	10466	89	19.5	-20.4	NP_044471		5' arm      3' arm
5249	+	96583	90	21	-20.4	NP_044513		5' arm      3' arm
5515	-	147878	86	21	-20.49	NP_044543		5' arm      3' arm
5228	+	83354	89	21.5	-20.5	NP_044507		5' arm      3' arm
5425	-	80895	90	23	-20.5	NP_044506		5' arm      3' arm
5179	+	50099	90	19.5	-20.6	NP_044494		5' arm      3' arm
5402	-	55029	87	19.5	-20.6	NP_044497		5' arm      3' arm
5395	-	50931	89	20.5	-20.6			5' arm      3' arm
5119	+	13247	88	21	-20.6	NP_044474		5' arm      3' arm
5498	-	139036	90	20	-20.6	NP_044534		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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