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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23823 | - | 101068 | 90 | 20 | -32.5 | NP_954949 | 5' arm 3' arm | ||
| 23745 | - | 28588 | 89 | 20 | -20.8 | NP_954909 | 5' arm 3' arm | ||
| 23809 | - | 92805 | 89 | 20 | -25.1 | NP_954941 | 5' arm 3' arm | ||
| 23766 | - | 58016 | 90 | 20 | -21.6 | NP_954920 | 5' arm 3' arm | ||
| 23666 | + | 101223 | 90 | 20 | -21.8 | NP_954949 | 5' arm 3' arm | ||
| 23748 | - | 39456 | 88 | 20 | -24.1 | NP_954911 | 5' arm 3' arm | ||
| 23846 | - | 123579 | 89 | 20 | -27 | NP_954960 | 5' arm 3' arm | ||
| 23697 | + | 127661 | 90 | 20 | -21.5 | NP_954954 | 5' arm 3' arm | ||
| 23603 | + | 47962 | 90 | 20 | -22.7 | NP_954917 | 5' arm 3' arm | ||
| 23626 | + | 69360 | 88 | 20 | -21.6 | NP_954927 | |||
| 23658 | + | 96149 | 89 | 20 | -20.4 | NP_954943 | 5' arm 3' arm | ||
| 23732 | - | 23742 | 89 | 20 | -22.9 | NP_954907 | 5' arm 3' arm | ||
| 23797 | - | 82659 | 87 | 20 | -28.5 | NP_954934 | 5' arm 3' arm | ||
| 23832 | - | 115352 | 90 | 20 | -21.5 | NP_954963 | 5' arm 3' arm | ||
| 23610 | + | 53154 | 87 | 20 | -27 | NP_954918 | 5' arm 3' arm | ||
| 23607 | + | 51930 | 89 | 20 | -22.9 | 5' arm 3' arm | |||
| 23836 | - | 117693 | 87 | 20 | -21.8 | NP_954956 | 5' arm 3' arm | ||
| 23731 | - | 23642 | 89 | 20 | -19.8 | NP_954907 | 5' arm 3' arm | ||
| 23657 | + | 95427 | 90 | 20 | -26 | NP_954942 | 5' arm 3' arm | ||
| 23562 | + | 9216 | 88 | 20 | -20.73 | NP_954897 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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