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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29852 | + | 124209 | 90 | 25 | -25 | YP_081532 | 5' arm 3' arm | ||
| 30068 | - | 64468 | 82 | 25 | -26 | YP_081505 | 5' arm 3' arm | ||
| 1657 | + | 111869 | 87 | 25 | -28.9 | NP_040010 | 5' arm 3' arm | ||
| 1539 | + | 4532 | 90 | 25 | -28.7 | 5' arm 3' arm | |||
| 1566 | + | 37950 | 85 | 25 | -24.2 | NP_783780 | 5' arm 3' arm | ||
| 29984 | + | 232981 | 87 | 25 | -24.5 | YP_081619 | 5' arm 3' arm | ||
| 1660 | + | 113767 | 89 | 25 | -23.9 | 5' arm 3' arm | |||
| 29833 | + | 114138 | 89 | 25 | -23.9 | 5' arm 3' arm | |||
| 29742 | + | 38296 | 85 | 25 | -30.1 | YP_081490 | 5' arm 3' arm | ||
| 30038 | - | 43771 | 90 | 25 | -22 | YP_081492 | 5' arm 3' arm | ||
| 29955 | + | 202396 | 81 | 25 | -23.3 | #hcmv-mir-US5-2 | 3' arm | ||
| 2001 | - | 185866 | 90 | 25 | -28.7 | 5' arm 3' arm | |||
| 29946 | + | 193844 | 90 | 25 | -25.7 | YP_081586 | 5' arm 3' arm | ||
| 1919 | - | 91665 | 87 | 24.5 | -22.1 | 5' arm 3' arm | |||
| 29843 | + | 117892 | 89 | 24.5 | -32.6 | YP_081529 | 5' arm 3' arm | ||
| 29851 | + | 124055 | 88 | 24.5 | -22.2 | YP_081532 | 5' arm 3' arm | ||
| 1683 | + | 125251 | 89 | 24.5 | -29.2 | NP_040021 | 5' arm 3' arm | ||
| 29723 | + | 8571 | 90 | 24.5 | -23.9 | YP_081458 | 5' arm 3' arm | ||
| 29856 | + | 125627 | 89 | 24.5 | -29.2 | YP_081534 | 5' arm 3' arm | ||
| 1670 | + | 117521 | 89 | 24.5 | -32.6 | NP_040015 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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