miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
16276	+	12931	90	22	-22.4	NP_665937		5' arm      3' arm
16471	-	47597	88	22	-22.8	NP_665996		5' arm      3' arm
16249	+	409	89	22	-24.2	NP_665919		5' arm      3' arm
16343	+	46901	90	22	-25.9	NP_665995		5' arm      3' arm
16301	+	25240	90	21.5	-23.3	NP_665953		5' arm      3' arm
16335	+	44216	90	21.5	-25.7	NP_665988		5' arm      3' arm
16328	+	39822	89	21.5	-20.4	NP_665976		5' arm      3' arm
16257	+	3028	87	21.5	-23.9	NP_665923		5' arm      3' arm
16395	-	11271	90	21.5	-23.3	NP_665935		5' arm      3' arm
16265	+	8814	89	21.5	-23.7	NP_665930		5' arm      3' arm
16398	-	12521	88	21.5	-22.2	NP_665936		5' arm      3' arm
16443	-	38533	89	21.5	-19.8	NP_665974		5' arm      3' arm
16430	-	34713	89	21.5	-25.5	NP_665969		5' arm      3' arm
16490	-	53217	87	21.5	-26.2	NP_666005		5' arm      3' arm
16488	-	52386	87	21.5	-23	NP_666002		5' arm      3' arm
16406	-	19653	85	21.5	-21.1	NP_665946		5' arm      3' arm
16291	+	19567	88	21.5	-19.6	NP_665946		5' arm      3' arm
16310	+	29322	88	21.5	-20	NP_665959		5' arm      3' arm
16414	-	22629	88	21.5	-20.1	NP_665950		5' arm      3' arm
16422	-	27196	89	21.5	-25	NP_665954		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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