miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29125	-	144591	89	23	-27			5' arm      3' arm
29021	-	57390	88	23	-34.7	YP_067952		5' arm      3' arm
28997	-	30839	88	23	-25.2	YP_067943		5' arm      3' arm
29096	-	125285	89	23	-23.9	YP_067998		5' arm      3' arm
28833	+	100941	88	23	-28	YP_067982		5' arm      3' arm
28834	+	101302	89	23	-21	YP_067982		5' arm      3' arm
28738	+	9290	89	23	-32.2			5' arm      3' arm
28910	+	153898	90	23	-27	YP_068009		5' arm      3' arm
29113	-	134378	89	23	-29.9			5' arm      3' arm
29107	-	131020	90	23	-26.6	YP_068001		5' arm      3' arm
28926	+	163854	89	23	-21.8			5' arm      3' arm
28781	+	48600	89	23	-27.2	YP_067950		5' arm      3' arm
29046	-	85938	88	23	-21.5	YP_067970		5' arm      3' arm
28911	+	154678	90	23	-21.6	YP_068009		5' arm      3' arm
29020	-	56566	79	22.5	-25.6	YP_067951		5' arm      3' arm
29037	-	79348	89	22.5	-28.51	YP_067966		5' arm      3' arm
29039	-	80941	86	22.5	-20.6	YP_067967		5' arm      3' arm
28776	+	46715	90	22.5	-20.9	YP_067950		5' arm      3' arm
28784	+	49821	89	22.5	-31.5	YP_067950		5' arm      3' arm
28828	+	94429	86	22.5	-24.6	YP_067977		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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