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GenBank Identifier | RefSeq Acc. | Name |
9790357 | NC_001559.1 | Vaccinia virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
3365 | + | 4765 | 90 | 19.5 | -21.6 | 5' arm 3' arm | |||
3366 | + | 10347 | 88 | 20 | -22.8 | 5' arm 3' arm | |||
3367 | + | 170510 | 90 | 24.5 | -19.8 | 5' arm 3' arm | |||
3368 | + | 182023 | 88 | 19 | -21.1 | 5' arm 3' arm | |||
3369 | + | 182274 | 86 | 21 | -26.09 | 5' arm 3' arm | |||
3370 | - | 9464 | 86 | 21 | -26.09 | 5' arm 3' arm | |||
3371 | - | 9715 | 88 | 19 | -21.1 | 5' arm 3' arm | |||
3372 | - | 16135 | 87 | 22.5 | -24.3 | 5' arm 3' arm | |||
3373 | - | 51328 | 90 | 21.5 | -21.3 | 5' arm 3' arm | |||
3374 | - | 57242 | 88 | 24 | -24.5 | 5' arm 3' arm | |||
3375 | - | 181391 | 88 | 20 | -22.8 | 5' arm 3' arm | |||
3376 | - | 186973 | 90 | 19.5 | -21.6 | 5' arm 3' arm | |||
32049 | + | 4132 | 90 | 19.5 | -21.6 | YP_232883 | 5' arm 3' arm | ||
32050 | + | 171487 | 90 | 24.5 | -19.8 | YP_233073 | 5' arm 3' arm | ||
32051 | + | 174530 | 87 | 23 | -19.5 | 5' arm 3' arm | |||
32052 | - | 48197 | 90 | 21.5 | -21.3 | YP_232941 | 5' arm 3' arm | ||
32053 | - | 54111 | 88 | 24 | -24.5 | YP_232947 | 5' arm 3' arm | ||
32054 | - | 122091 | 88 | 20 | -20 | YP_233012 | 5' arm 3' arm | ||
32055 | - | 190580 | 90 | 19.5 | -21.6 | YP_232883 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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