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GenBank Identifier | RefSeq Acc. | Name |
41057066 | NC_005336.1 | Orf virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
25026 | + | 761 | 88 | 20 | -23.5 | 5' arm 3' arm | |||
25027 | + | 875 | 88 | 20 | -22.1 | 5' arm 3' arm | |||
25028 | + | 1631 | 90 | 22 | -19.43 | 5' arm 3' arm | |||
25029 | + | 2101 | 89 | 25.5 | -30.7 | 5' arm 3' arm | |||
25030 | + | 2614 | 90 | 24 | -20.8 | 5' arm 3' arm | |||
25031 | + | 2715 | 89 | 28.5 | -31.6 | 5' arm 3' arm | |||
25032 | + | 2870 | 90 | 27.5 | -26.1 | 5' arm 3' arm | |||
25033 | + | 3553 | 89 | 23.5 | -24.2 | NP_957781 | 5' arm 3' arm | ||
25034 | + | 5582 | 88 | 21 | -25.3 | NP_957784 | 5' arm 3' arm | ||
25035 | + | 6133 | 88 | 20.5 | -23.7 | NP_957785 | 5' arm 3' arm | ||
25036 | + | 7442 | 89 | 19.5 | -24.5 | NP_957786 | 5' arm 3' arm | ||
25037 | + | 8042 | 86 | 19 | -29.3 | NP_957786 | 5' arm 3' arm | ||
25038 | + | 8276 | 85 | 21 | -19.6 | NP_957786 | 5' arm 3' arm | ||
25039 | + | 9082 | 88 | 22 | -25.6 | NP_957787 | 5' arm 3' arm | ||
25040 | + | 9222 | 89 | 19 | -29.9 | NP_957787 | 5' arm 3' arm | ||
25041 | + | 10161 | 89 | 22 | -24.3 | NP_957787 | 5' arm 3' arm | ||
25042 | + | 10507 | 90 | 21.5 | -29.9 | NP_957787 | 5' arm 3' arm | ||
25043 | + | 10600 | 88 | 20.5 | -32.5 | NP_957787 | 5' arm 3' arm | ||
25044 | + | 10816 | 87 | 20 | -20.4 | NP_957788 | 5' arm 3' arm | ||
25045 | + | 10916 | 86 | 22 | -22.9 | NP_957788 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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