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| GenBank Identifier | RefSeq Acc. | Name |
| 41057066 | NC_005336.1 | Orf virus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25138 | + | 61267 | 90 | 20.5 | -19.4 | NP_957837 | 5' arm 3' arm | ||
| 25100 | + | 37385 | 88 | 22 | -19.4 | NP_957812 | 5' arm 3' arm | ||
| 25229 | + | 104839 | 83 | 22 | -19.4 | NP_957878 | 5' arm 3' arm | ||
| 25070 | + | 22617 | 87 | 21 | -19.4 | NP_957799 | 5' arm 3' arm | ||
| 25114 | + | 47577 | 87 | 21 | -19.4 | NP_957823 | 5' arm 3' arm | ||
| 25403 | - | 75615 | 87 | 19 | -19.4 | NP_957849 | 5' arm 3' arm | ||
| 25500 | - | 138332 | 90 | 22 | -19.43 | 5' arm 3' arm | |||
| 25028 | + | 1631 | 90 | 22 | -19.43 | 5' arm 3' arm | |||
| 25209 | + | 94123 | 88 | 21.5 | -19.5 | NP_957865 | 5' arm 3' arm | ||
| 25359 | - | 52699 | 89 | 19 | -19.5 | NP_957830 | 5' arm 3' arm | ||
| 25305 | - | 24445 | 85 | 19.5 | -19.5 | NP_957801 | 5' arm 3' arm | ||
| 25449 | - | 101717 | 89 | 19.5 | -19.5 | NP_957877 | 5' arm 3' arm | ||
| 25123 | + | 53557 | 89 | 20.5 | -19.6 | NP_957831 | 5' arm 3' arm | ||
| 25038 | + | 8276 | 85 | 21 | -19.6 | NP_957786 | 5' arm 3' arm | ||
| 25128 | + | 56007 | 86 | 22 | -19.6 | NP_957833 | 5' arm 3' arm | ||
| 25434 | - | 93102 | 89 | 21.5 | -19.6 | NP_957864 | 5' arm 3' arm | ||
| 25132 | + | 58337 | 89 | 20 | -19.7 | NP_957834 | 5' arm 3' arm | ||
| 25432 | - | 90511 | 88 | 22 | -19.7 | NP_957863 | 5' arm 3' arm | ||
| 25323 | - | 32089 | 87 | 19 | -19.7 | NP_957806 | 5' arm 3' arm | ||
| 25313 | - | 28673 | 87 | 19 | -19.7 | NP_957805 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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