miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56694721 NC_006560.1 Cercopithecine herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31037 + 53038 90 24 -23.3 YP_164470 5' arm      3' arm
31257 - 124412 84 24 -31.8 5' arm      3' arm
31199 - 68779 89 24 -20.4 YP_164477 5' arm      3' arm
30995 + 8813 90 24 -32.5 5' arm      3' arm
31250 - 114717 90 24 -32.5 5' arm      3' arm
31125 + 149597 84 24 -31.8 5' arm      3' arm
31126 + 149721 84 24 -29.9 5' arm      3' arm
31256 - 124288 84 24 -29.9 5' arm      3' arm
31233 - 101415 87 23.5 -21.7 YP_164491 5' arm      3' arm
31152 - 27146 83 23.5 -30.1 YP_164455 5' arm      3' arm
31159 - 33563 90 23.5 -20.7 YP_164457 5' arm      3' arm
31166 - 39729 89 23.5 -21.1 YP_164461 5' arm      3' arm
31066 + 79867 90 23.5 -33 YP_164480 5' arm      3' arm
31112 + 130775 90 23.5 -21.4 YP_164503 5' arm      3' arm
31015 + 35958 90 23.5 -24.5 YP_164461 5' arm      3' arm
31149 - 22264 90 23.5 -26.6 YP_164451 5' arm      3' arm
31104 + 120423 89 23 -27 5' arm      3' arm
31052 + 62498 90 23 -25.6 YP_164473 5' arm      3' arm
31018 + 39497 90 23 -24 YP_164461 5' arm      3' arm
31048 + 59404 89 23 -30.8 YP_164472 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.