miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31240	-	106305	88	19.5	-32.3	YP_164495		5' arm      3' arm
31245	-	110606	90	22	-32.1			5' arm      3' arm
31116	+	134449	90	21.5	-32	YP_164506		5' arm      3' arm
31125	+	149597	84	24	-31.8			5' arm      3' arm
31257	-	124412	84	24	-31.8			5' arm      3' arm
31143	-	13191	85	23	-31.1	YP_164447		5' arm      3' arm
31243	-	110098	90	21	-31.1	YP_164497		5' arm      3' arm
31157	-	33149	87	20	-31	YP_164459		5' arm      3' arm
31237	-	104055	88	21	-31			5' arm      3' arm
31048	+	59404	89	23	-30.8	YP_164472		5' arm      3' arm
31101	+	111852	90	20.5	-30.7	YP_164498		5' arm      3' arm
31161	-	34345	90	23	-30.7	YP_164457		5' arm      3' arm
31269	-	149807	90	25.5	-30.5			5' arm      3' arm
31163	-	36625	88	20.5	-30.5	YP_164461		5' arm      3' arm
31108	+	124202	90	25.5	-30.5			5' arm      3' arm
31086	+	96652	90	22	-30.4	YP_164489		5' arm      3' arm
31017	+	39203	88	24.5	-30.4	YP_164461		5' arm      3' arm
31171	-	42192	90	20	-30.2	YP_164463		5' arm      3' arm
31178	-	51061	90	26	-30.2	YP_164468		5' arm      3' arm
31062	+	71847	70	21.5	-30.2	YP_164479		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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