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| GenBank Identifier | RefSeq Acc. | Name |
| 56694721 | NC_006560.1 | Cercopithecine herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31255 | - | 124154 | 90 | 22 | -30.1 | 5' arm 3' arm | |||
| 31152 | - | 27146 | 83 | 23.5 | -30.1 | YP_164455 | 5' arm 3' arm | ||
| 31127 | + | 149855 | 90 | 22 | -30.1 | 5' arm 3' arm | |||
| 31254 | - | 122756 | 88 | 24.5 | -30 | 5' arm 3' arm | |||
| 30991 | + | 774 | 88 | 24.5 | -30 | 5' arm 3' arm | |||
| 31134 | - | 9943 | 88 | 19 | -29.9 | YP_164443 | 5' arm 3' arm | ||
| 31135 | - | 10199 | 90 | 23 | -29.9 | YP_164443 | 5' arm 3' arm | ||
| 31256 | - | 124288 | 84 | 24 | -29.9 | 5' arm 3' arm | |||
| 31126 | + | 149721 | 84 | 24 | -29.9 | 5' arm 3' arm | |||
| 31123 | + | 143215 | 89 | 21.5 | -29.9 | YP_164513 | 5' arm 3' arm | ||
| 31053 | + | 63424 | 90 | 20 | -29.5 | YP_164473 | 5' arm 3' arm | ||
| 30993 | + | 1682 | 90 | 20.5 | -29.4 | 5' arm 3' arm | |||
| 31252 | - | 121848 | 90 | 20.5 | -29.4 | 5' arm 3' arm | |||
| 31137 | - | 11656 | 90 | 21 | -29.4 | YP_164445 | 5' arm 3' arm | ||
| 31153 | - | 27853 | 90 | 21 | -29.4 | YP_164455 | 5' arm 3' arm | ||
| 31100 | + | 110809 | 90 | 21 | -29.3 | YP_164498 | 5' arm 3' arm | ||
| 31205 | - | 80516 | 90 | 20 | -29.2 | YP_164480 | 5' arm 3' arm | ||
| 31087 | + | 97363 | 89 | 22 | -29.2 | YP_164489 | 5' arm 3' arm | ||
| 31093 | + | 103900 | 89 | 19.5 | -29.2 | 5' arm 3' arm | |||
| 31067 | + | 80420 | 87 | 21.5 | -29.2 | YP_164480 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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