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| GenBank Identifier | RefSeq Acc. | Name |
| 56694721 | NC_006560.1 | Cercopithecine herpesvirus 2 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31232 | - | 100747 | 90 | 19.5 | -21 | 5' arm 3' arm | |||
| 31223 | - | 87793 | 82 | 19.5 | -23.3 | YP_164482 | 5' arm 3' arm | ||
| 31227 | - | 89230 | 90 | 19.5 | -21.3 | YP_164483 | 5' arm 3' arm | ||
| 31141 | - | 12838 | 89 | 19.5 | -22.4 | YP_164447 | 5' arm 3' arm | ||
| 31010 | + | 29649 | 89 | 19.5 | -21.4 | YP_164457 | 5' arm 3' arm | ||
| 31240 | - | 106305 | 88 | 19.5 | -32.3 | YP_164495 | 5' arm 3' arm | ||
| 31262 | - | 136323 | 89 | 19.5 | -28.3 | 5' arm 3' arm | |||
| 31265 | - | 139284 | 90 | 19.5 | -22.3 | YP_164509 | 5' arm 3' arm | ||
| 31192 | - | 63682 | 90 | 19.5 | -22.5 | YP_164473 | 5' arm 3' arm | ||
| 31096 | + | 106945 | 87 | 20 | -25.9 | YP_164496 | 5' arm 3' arm | ||
| 31049 | + | 60416 | 88 | 20 | -20.1 | YP_164472 | 5' arm 3' arm | ||
| 31016 | + | 36711 | 89 | 20 | -26.3 | YP_164461 | 5' arm 3' arm | ||
| 31187 | - | 60229 | 86 | 20 | -23.4 | YP_164472 | 5' arm 3' arm | ||
| 31040 | + | 54738 | 90 | 20 | -23.8 | YP_164471 | 5' arm 3' arm | ||
| 31198 | - | 68201 | 90 | 20 | -19.94 | YP_164476 | 5' arm 3' arm | ||
| 31197 | - | 66567 | 88 | 20 | -21.4 | YP_164475 | 5' arm 3' arm | ||
| 31205 | - | 80516 | 90 | 20 | -29.2 | YP_164480 | 5' arm 3' arm | ||
| 31004 | + | 22533 | 87 | 20 | -20.4 | YP_164451 | 5' arm 3' arm | ||
| 31005 | + | 23548 | 90 | 20 | -19.5 | YP_164452 | 5' arm 3' arm | ||
| 31095 | + | 106575 | 90 | 20 | -23.1 | YP_164496 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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