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GenBank Identifier | RefSeq Acc. | Name |
9629818 | NC_001847.1 | Bovine herpesvirus 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
6676 | - | 118049 | 90 | 19.5 | -26 | NP_045369 | 5' arm 3' arm | ||
6614 | - | 79921 | 89 | 19.5 | -21.3 | NP_045342 | 5' arm 3' arm | ||
6478 | + | 99304 | 90 | 19.5 | -22.3 | NP_045360 | 5' arm 3' arm | ||
6344 | + | 79 | 90 | 19.5 | -22 | 5' arm 3' arm | |||
6348 | + | 3013 | 90 | 19.5 | -22.5 | NP_045305 | 5' arm 3' arm | ||
6589 | - | 60134 | 90 | 19.5 | -20.1 | NP_045332 | 5' arm 3' arm | ||
6354 | + | 9236 | 90 | 19.5 | -19.6 | 5' arm 3' arm | |||
6603 | - | 68968 | 88 | 19.5 | -26.34 | 5' arm 3' arm | |||
6563 | - | 40405 | 90 | 19.5 | -24.8 | NP_045322 | 5' arm 3' arm | ||
6420 | + | 57218 | 89 | 19.5 | -32.4 | NP_045331 | 5' arm 3' arm | ||
6507 | + | 126601 | 84 | 19.5 | -21.8 | 5' arm 3' arm | |||
6656 | - | 102544 | 89 | 19.5 | -29.1 | NP_045363 | 5' arm 3' arm | ||
6368 | + | 20440 | 89 | 19.5 | -28.9 | NP_045316 | 5' arm 3' arm | ||
6411 | + | 50829 | 89 | 19.5 | -21.4 | NP_045329 | 5' arm 3' arm | ||
6416 | + | 55105 | 90 | 19.5 | -23.7 | NP_045330 | 5' arm 3' arm | ||
6558 | - | 31330 | 90 | 19.5 | -33.1 | NP_045322 | 5' arm 3' arm | ||
6371 | + | 23689 | 90 | 19.5 | -21.5 | NP_045319 | 5' arm 3' arm | ||
6372 | + | 24324 | 87 | 19.5 | -29.4 | NP_045319 | 5' arm 3' arm | ||
6442 | + | 76187 | 85 | 19.5 | -25.9 | 5' arm 3' arm | |||
6669 | - | 115135 | 87 | 19.5 | -29 | NP_045367 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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