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| GenBank Identifier | RefSeq Acc. | Name |
| 30984428 | NC_004812.1 | Cercopithecine herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 21683 | - | 93635 | 78 | 19.5 | -30.32 | NP_851902 | 5' arm 3' arm | ||
| 21715 | - | 135427 | 87 | 19.5 | -20.9 | 5' arm 3' arm | |||
| 21489 | + | 89860 | 87 | 19.5 | -26.3 | NP_851900 | 5' arm 3' arm | ||
| 21429 | + | 55272 | 86 | 19.5 | -28.3 | NP_851888 | 5' arm 3' arm | ||
| 21430 | + | 55431 | 88 | 19.5 | -20.3 | NP_851888 | 5' arm 3' arm | ||
| 21432 | + | 56099 | 90 | 19.5 | -31.1 | NP_851888 | 5' arm 3' arm | ||
| 21681 | - | 92713 | 90 | 19.5 | -28 | NP_851902 | 5' arm 3' arm | ||
| 21433 | + | 58185 | 90 | 19.5 | -21.7 | NP_851889 | 5' arm 3' arm | ||
| 21398 | + | 30623 | 90 | 19.5 | -22.3 | NP_851875 | 5' arm 3' arm | ||
| 21391 | + | 24217 | 90 | 19.5 | -21.8 | 5' arm 3' arm | |||
| 21721 | - | 138481 | 90 | 19.5 | -22.5 | NP_851923 | 5' arm 3' arm | ||
| 21695 | - | 110001 | 90 | 19.5 | -21 | NP_851913 | 5' arm 3' arm | ||
| 21447 | + | 63380 | 90 | 19.5 | -25.5 | NP_851890 | 5' arm 3' arm | ||
| 21505 | + | 98212 | 89 | 19.5 | -20.2 | NP_851906 | 5' arm 3' arm | ||
| 21384 | + | 20523 | 83 | 19.5 | -23.36 | NP_851868 | 5' arm 3' arm | ||
| 21392 | + | 24889 | 86 | 19.5 | -23.2 | NP_851871 | 5' arm 3' arm | ||
| 21725 | - | 141821 | 87 | 19.5 | -21 | NP_851925 | 5' arm 3' arm | ||
| 21396 | + | 26524 | 80 | 19.5 | -24.3 | NP_851872 | 5' arm 3' arm | ||
| 21689 | - | 104038 | 84 | 19.5 | -20.5 | NP_851908 | 5' arm 3' arm | ||
| 21730 | - | 146439 | 88 | 19.5 | -23.1 | NP_851929 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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