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| GenBank Identifier | RefSeq Acc. | Name |
| 30984428 | NC_004812.1 | Cercopithecine herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 21510 | + | 103056 | 90 | 22.5 | -29.8 | NP_851908 | 5' arm 3' arm | ||
| 21687 | - | 103225 | 90 | 21.5 | -29.7 | NP_851908 | 5' arm 3' arm | ||
| 21504 | + | 97984 | 87 | 23.5 | -29.7 | NP_851906 | 5' arm 3' arm | ||
| 21731 | - | 148132 | 90 | 20 | -29.6 | NP_851930 | 5' arm 3' arm | ||
| 21512 | + | 105583 | 89 | 22.5 | -29.6 | 5' arm 3' arm | |||
| 21508 | + | 101231 | 89 | 20 | -29.4 | NP_851907 | 5' arm 3' arm | ||
| 21615 | - | 44353 | 89 | 26 | -29.3 | NP_851881 | 5' arm 3' arm | ||
| 21638 | - | 61136 | 85 | 23 | -29.2 | NP_851889 | 5' arm 3' arm | ||
| 21555 | + | 150592 | 86 | 24 | -29.1 | 5' arm 3' arm | |||
| 21515 | + | 106863 | 90 | 22 | -29.1 | NP_851911 | 5' arm 3' arm | ||
| 21710 | - | 131832 | 86 | 24 | -29.1 | 5' arm 3' arm | |||
| 21619 | - | 45938 | 89 | 20 | -29.1 | 5' arm 3' arm | |||
| 21588 | - | 22681 | 88 | 23.5 | -28.8 | NP_851868 | 5' arm 3' arm | ||
| 21538 | + | 134247 | 89 | 21.5 | -28.7 | NP_851920 | 5' arm 3' arm | ||
| 21677 | - | 90103 | 76 | 20.5 | -28.6 | NP_851900 | 5' arm 3' arm | ||
| 21424 | + | 53344 | 90 | 20 | -28.6 | NP_851887 | 5' arm 3' arm | ||
| 21385 | + | 21138 | 90 | 19 | -28.4 | NP_851868 | 5' arm 3' arm | ||
| 21439 | + | 60216 | 88 | 19 | -28.4 | NP_851889 | 5' arm 3' arm | ||
| 21662 | - | 84986 | 86 | 21.5 | -28.4 | NP_851898 | 5' arm 3' arm | ||
| 21429 | + | 55272 | 86 | 19.5 | -28.3 | NP_851888 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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