miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2681	+	87236	84	19	-19.4	YP_053092		5' arm      3' arm
2643	+	31749	88	19	-19.4	YP_053067		5' arm      3' arm
2769	-	59548	89	20	-19.4	YP_053077		5' arm      3' arm
2714	+	135643	90	21.5	-19.5	YP_053118		5' arm      3' arm
2824	-	146298	89	20	-19.6	YP_053108		5' arm      3' arm
2703	+	116862	89	20	-19.6	YP_053124		5' arm      3' arm
2682	+	87420	87	21.5	-19.7	YP_053092		5' arm      3' arm
2740	-	16122	87	23	-19.7	YP_053058		5' arm      3' arm
2779	-	75494	89	19.5	-19.7	YP_053086		5' arm      3' arm
2674	+	80928	90	21	-19.7	YP_053088		5' arm      3' arm
2656	+	55735	88	20	-19.8	YP_053076		5' arm      3' arm
2639	+	16706	88	22	-19.8	YP_053058		5' arm      3' arm
2787	-	89904	90	19.5	-19.8	YP_053094		5' arm      3' arm
2624	+	2525	89	21	-19.9			5' arm      3' arm
2657	+	58516	88	19	-19.9	YP_053076		5' arm      3' arm
2789	-	93722	89	20	-20	YP_053096		5' arm      3' arm
2718	+	140241	89	21.5	-20	YP_053122		5' arm      3' arm
2707	+	119269	90	23	-20			5' arm      3' arm
2671	+	76038	89	20	-20	YP_053086		5' arm      3' arm
2809	-	122919	89	21.5	-20	YP_053122		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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