miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51557483 NC_006151.1 Suid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
29446 + 68893 90 19 -25.2 YP_068356 5' arm      3' arm
29447 + 69121 87 22 -24.1 YP_068356 5' arm      3' arm
29448 + 70410 86 19 -24.2 YP_068356 5' arm      3' arm
29449 + 70910 89 25 -27.8 YP_068357 5' arm      3' arm
29450 + 72234 88 21 -25 YP_068358 5' arm      3' arm
29451 + 72920 86 23 -25 YP_068358 5' arm      3' arm
29452 + 77759 90 22 -23.3 YP_068362 5' arm      3' arm
29453 + 78112 89 20.5 -22.5 YP_068362 5' arm      3' arm
29454 + 78647 81 22.5 -25.5 YP_068362 5' arm      3' arm
29455 + 78747 88 22.5 -30.8 YP_068363 5' arm      3' arm
29456 + 79362 89 20 -23.4 YP_068363 5' arm      3' arm
29457 + 79657 86 20 -23 YP_068363 5' arm      3' arm
29458 + 80141 90 19 -21 YP_068364 5' arm      3' arm
29459 + 80881 89 21.5 -28.1 YP_068365 5' arm      3' arm
29460 + 81170 81 19 -24.2 YP_068365 5' arm      3' arm
29461 + 82147 90 19.5 -23.3 YP_068366 5' arm      3' arm
29462 + 82370 87 22.5 -22.4 YP_068366 5' arm      3' arm
29463 + 82828 90 22 -21.2 YP_068366 5' arm      3' arm
29464 + 83119 90 21.5 -21.8 YP_068367 5' arm      3' arm
29465 + 83235 89 22 -23.7 YP_068366 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.