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| GenBank Identifier | RefSeq Acc. | Name |
| 82503188 | NC_007605.1 | Human herpesvirus 4 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 33589 | - | 135025 | 84 | 20.5 | -20.6 | YP_401726 | 5' arm 3' arm | ||
| 33366 | + | 134940 | 88 | 20 | -22.1 | YP_401726 | 5' arm 3' arm | ||
| 33571 | - | 116866 | 90 | 20 | -20.1 | YP_401725 | 5' arm 3' arm | ||
| 33421 | + | 167952 | 89 | 23.5 | -23 | YP_401722 | 5' arm 3' arm | ||
| 33420 | + | 165100 | 90 | 21 | -31 | YP_401719 | 5' arm 3' arm | ||
| 33414 | + | 162239 | 82 | 21 | -23 | YP_401717 | 5' arm 3' arm | ||
| 33617 | - | 161176 | 87 | 22 | -26.7 | YP_401717 | 5' arm 3' arm | ||
| 33418 | + | 163825 | 89 | 20.5 | -24.3 | YP_401717 | 5' arm 3' arm | ||
| 33413 | + | 161843 | 89 | 21.5 | -31.9 | YP_401717 | 5' arm 3' arm | ||
| 33417 | + | 163626 | 85 | 19 | -20.8 | YP_401717 | 5' arm 3' arm | ||
| 33415 | + | 163341 | 90 | 19 | -22.7 | YP_401717 | 5' arm 3' arm | ||
| 33620 | - | 163062 | 89 | 20 | -20.7 | YP_401717 | 5' arm 3' arm | ||
| 33619 | - | 162645 | 90 | 20 | -25 | YP_401717 | 5' arm 3' arm | ||
| 33621 | - | 163397 | 87 | 19 | -21.1 | YP_401717 | 5' arm 3' arm | ||
| 33618 | - | 161932 | 89 | 21.5 | -29.9 | YP_401717 | 5' arm 3' arm | ||
| 33416 | + | 163506 | 87 | 20.5 | -30.6 | YP_401717 | 5' arm 3' arm | ||
| 33616 | - | 161082 | 85 | 20.5 | -23.7 | YP_401717 | 5' arm 3' arm | ||
| 33623 | - | 164218 | 86 | 19.5 | -25.7 | YP_401717 | 5' arm 3' arm | ||
| 33622 | - | 164039 | 90 | 19.5 | -23.9 | YP_401717 | 5' arm 3' arm | ||
| 33419 | + | 164061 | 87 | 19 | -20.6 | YP_401717 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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