miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
33538	-	85745	87	19.5	-36.84	YP_401670		5' arm      3' arm
33273	+	9009	86	28	-35			5' arm      3' arm
33591	-	136425	86	26.5	-34.3	YP_401704		5' arm      3' arm
33597	-	139989	90	26	-34.3			5' arm      3' arm
33392	+	150090	90	22.5	-33.4	YP_401708		5' arm      3' arm
33608	-	150933	89	22.5	-33.2	YP_401709		5' arm      3' arm
33518	-	64262	89	19.5	-33	YP_401655		5' arm      3' arm
33377	+	140357	89	23	-32.9			5' arm      3' arm
33599	-	140445	90	21.5	-32.9			5' arm      3' arm
33426	-	3022	87	22	-32.6	YP_401633		5' arm      3' arm
33375	+	139901	88	26.5	-32.4		ebv-mir-BART17	5' arm      3' arm
33587	-	133247	88	21.5	-32	YP_401702		5' arm      3' arm
33508	-	59616	89	22.5	-31.9	YP_401653		5' arm      3' arm
33413	+	161843	89	21.5	-31.9	YP_401717		5' arm      3' arm
33483	-	31660	70	19.5	-31.3	YP_401639		5' arm      3' arm
33491	-	34732	70	19.5	-31.3	YP_401640		5' arm      3' arm
33475	-	28588	70	19.5	-31.3	YP_401637		5' arm      3' arm
33460	-	22444	70	19.5	-31.3	YP_401642		5' arm      3' arm
33444	-	16300	70	19.5	-31.3	YP_401635		5' arm      3' arm
33452	-	19372	70	19.5	-31.3	YP_401635		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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