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| GenBank Identifier | RefSeq Acc. | Name |
| 82503188 | NC_007605.1 | Human herpesvirus 4 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 33577 | - | 124248 | 89 | 19 | -19.4 | YP_401697 | 5' arm 3' arm | ||
| 33267 | + | 4166 | 88 | 20.5 | -19.6 | YP_401633 | 5' arm 3' arm | ||
| 33581 | - | 126300 | 90 | 19 | -19.6 | YP_401698 | 5' arm 3' arm | ||
| 33464 | - | 24321 | 88 | 20.5 | -19.7 | 5' arm 3' arm | |||
| 33487 | - | 33537 | 88 | 20.5 | -19.7 | 5' arm 3' arm | |||
| 33440 | - | 15105 | 88 | 20.5 | -19.7 | 5' arm 3' arm | |||
| 33448 | - | 18177 | 88 | 20.5 | -19.7 | 5' arm 3' arm | |||
| 33479 | - | 30465 | 88 | 20.5 | -19.7 | 5' arm 3' arm | |||
| 33456 | - | 21249 | 88 | 20.5 | -19.7 | 5' arm 3' arm | |||
| 33329 | + | 74202 | 89 | 19.5 | -19.8 | YP_401662 | 5' arm 3' arm | ||
| 33318 | + | 63499 | 89 | 20 | -19.8 | YP_401654 | 5' arm 3' arm | ||
| 33381 | + | 146755 | 90 | 30 | -19.9 | ebv-mir-BART8 | 5' arm 3' arm | ||
| 33427 | - | 6567 | 89 | 23.5 | -19.9 | 5' arm 3' arm | |||
| 33307 | + | 56203 | 87 | 19 | -19.9 | YP_401652 | 5' arm 3' arm | ||
| 33395 | + | 152079 | 85 | 21 | -19.9 | YP_401711 | 5' arm 3' arm | ||
| 33606 | - | 148891 | 90 | 21 | -19.9 | 5' arm 3' arm | |||
| 33576 | - | 122600 | 90 | 22 | -19.9 | YP_401697 | 5' arm 3' arm | ||
| 33266 | + | 3879 | 90 | 20 | -20 | YP_401633 | 5' arm 3' arm | ||
| 33400 | + | 155362 | 90 | 19.5 | -20 | YP_401710 | 5' arm 3' arm | ||
| 33516 | - | 62405 | 89 | 21.5 | -20 | YP_401653 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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