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| GenBank Identifier | RefSeq Acc. | Name |
| 82503188 | NC_007605.1 | Human herpesvirus 4 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 33266 | + | 3879 | 90 | 20 | -20 | YP_401633 | 5' arm 3' arm | ||
| 33516 | - | 62405 | 89 | 21.5 | -20 | YP_401653 | 5' arm 3' arm | ||
| 33580 | - | 125332 | 88 | 20.5 | -20.04 | YP_401698 | 5' arm 3' arm | ||
| 33571 | - | 116866 | 90 | 20 | -20.1 | YP_401725 | 5' arm 3' arm | ||
| 33388 | + | 148510 | 89 | 23.5 | -20.3 | ebv-mir-BART13 | 3' arm | ||
| 33335 | + | 77592 | 90 | 23 | -20.3 | YP_401667 | 5' arm 3' arm | ||
| 33579 | - | 125123 | 90 | 20 | -20.4 | YP_401697 | 5' arm 3' arm | ||
| 33364 | + | 132975 | 87 | 22 | -20.4 | YP_401702 | 5' arm 3' arm | ||
| 33274 | + | 9112 | 89 | 20.5 | -20.4 | 5' arm 3' arm | |||
| 33359 | + | 122362 | 88 | 20 | -20.5 | YP_401697 | 5' arm 3' arm | ||
| 33382 | + | 146943 | 90 | 21.5 | -20.6 | ebv-mir-BART9 | 3' arm | ||
| 33589 | - | 135025 | 84 | 20.5 | -20.6 | YP_401726 | 5' arm 3' arm | ||
| 33351 | + | 107450 | 90 | 19 | -20.6 | YP_401685 | 5' arm 3' arm | ||
| 33331 | + | 74909 | 88 | 20.5 | -20.6 | YP_401663 | 5' arm 3' arm | ||
| 33509 | - | 60512 | 90 | 19.5 | -20.6 | YP_401653 | 5' arm 3' arm | ||
| 33419 | + | 164061 | 87 | 19 | -20.6 | YP_401717 | 5' arm 3' arm | ||
| 33379 | + | 145947 | 87 | 27.5 | -20.6 | ebv-mir-BART18 | 5' arm | ||
| 33264 | + | 2377 | 88 | 20 | -20.7 | YP_401633 | 5' arm 3' arm | ||
| 33620 | - | 163062 | 89 | 20 | -20.7 | YP_401717 | 5' arm 3' arm | ||
| 33403 | + | 156859 | 90 | 20 | -20.7 | YP_401714 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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