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| GenBank Identifier | RefSeq Acc. | Name |
| 82503188 | NC_007605.1 | Human herpesvirus 4 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 33468 | - | 25516 | 70 | 19.5 | -31.3 | YP_401640 | 5' arm 3' arm | ||
| 33460 | - | 22444 | 70 | 19.5 | -31.3 | YP_401642 | 5' arm 3' arm | ||
| 33316 | + | 62233 | 90 | 23.5 | -31.2 | YP_401653 | 5' arm 3' arm | ||
| 33420 | + | 165100 | 90 | 21 | -31 | YP_401719 | 5' arm 3' arm | ||
| 33629 | - | 170780 | 89 | 21.5 | -30.9 | 5' arm 3' arm | |||
| 33503 | - | 53479 | 87 | 19.5 | -30.7 | YP_401652 | 5' arm 3' arm | ||
| 33416 | + | 163506 | 87 | 20.5 | -30.6 | YP_401717 | 5' arm 3' arm | ||
| 33534 | - | 84550 | 88 | 22 | -30.4 | YP_401670 | 5' arm 3' arm | ||
| 33611 | - | 156187 | 88 | 19 | -30 | YP_401712 | 5' arm 3' arm | ||
| 33526 | - | 75693 | 90 | 20 | -30 | YP_401664 | 5' arm 3' arm | ||
| 33618 | - | 161932 | 89 | 21.5 | -29.9 | YP_401717 | 5' arm 3' arm | ||
| 33515 | - | 62285 | 88 | 21.5 | -29.9 | YP_401653 | 5' arm 3' arm | ||
| 33373 | + | 139661 | 89 | 24 | -29.8 | ebv-mir-BART5 | 5' arm | ||
| 33532 | - | 81964 | 90 | 19.5 | -29.8 | YP_401669 | 5' arm 3' arm | ||
| 33602 | - | 146510 | 86 | 24 | -29.8 | 5' arm 3' arm | |||
| 33361 | + | 123679 | 88 | 21 | -29.7 | YP_401697 | 5' arm 3' arm | ||
| 33284 | + | 44529 | 90 | 21.5 | -29.6 | YP_401647 | 5' arm 3' arm | ||
| 33494 | - | 41546 | 84 | 20.5 | -29.6 | 5' arm 3' arm | |||
| 33354 | + | 115371 | 90 | 23.5 | -29.5 | YP_401692 | 5' arm 3' arm | ||
| 33330 | + | 74658 | 90 | 20 | -29.36 | YP_401663 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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