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| GenBank Identifier | RefSeq Acc. | Name |
| 82503188 | NC_007605.1 | Human herpesvirus 4 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 33334 | + | 77324 | 78 | 21 | -29.3 | YP_401667 | 5' arm 3' arm | ||
| 33305 | + | 55434 | 88 | 22.5 | -29.3 | YP_401652 | 5' arm 3' arm | ||
| 33551 | - | 102000 | 90 | 19 | -29.3 | YP_401681 | 5' arm 3' arm | ||
| 33533 | - | 84364 | 90 | 22.5 | -29.2 | YP_401670 | 5' arm 3' arm | ||
| 33613 | - | 157336 | 79 | 21 | -29.2 | YP_401713 | 5' arm 3' arm | ||
| 33556 | - | 105205 | 89 | 23 | -29.2 | 5' arm 3' arm | |||
| 33513 | - | 61879 | 89 | 25.5 | -29.2 | YP_401653 | 5' arm 3' arm | ||
| 33627 | - | 170267 | 89 | 20 | -29.1 | 5' arm 3' arm | |||
| 33632 | - | 171328 | 89 | 20 | -29.1 | 5' arm 3' arm | |||
| 33315 | + | 61247 | 90 | 20.5 | -29.1 | YP_401653 | 5' arm 3' arm | ||
| 33624 | - | 169729 | 89 | 20 | -29.1 | 5' arm 3' arm | |||
| 33554 | - | 103243 | 88 | 21.5 | -29.1 | YP_401682 | 5' arm 3' arm | ||
| 33511 | - | 60848 | 87 | 19.5 | -29 | YP_401653 | 5' arm 3' arm | ||
| 33522 | - | 73723 | 90 | 21 | -28.9 | YP_401662 | 5' arm 3' arm | ||
| 33302 | + | 54219 | 89 | 20.5 | -28.81 | YP_401652 | 5' arm 3' arm | ||
| 33291 | + | 49409 | 89 | 20.5 | -28.8 | YP_401651 | 5' arm 3' arm | ||
| 33323 | + | 67848 | 85 | 21 | -28.8 | YP_401657 | 5' arm 3' arm | ||
| 33399 | + | 154587 | 89 | 19 | -28.8 | YP_401712 | 5' arm 3' arm | ||
| 33402 | + | 155993 | 89 | 19 | -28.8 | YP_401712 | 5' arm 3' arm | ||
| 33297 | + | 52331 | 88 | 23 | -28.7 | YP_401652 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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