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| GenBank Identifier | RefSeq Acc. | Name |
| 82503188 | NC_007605.1 | Human herpesvirus 4 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 33495 | - | 44254 | 89 | 19 | -24.8 | YP_401647 | 5' arm 3' arm | ||
| 33324 | + | 68208 | 81 | 19 | -24.4 | YP_401657 | 5' arm 3' arm | ||
| 33415 | + | 163341 | 90 | 19 | -22.7 | YP_401717 | 5' arm 3' arm | ||
| 33294 | + | 51188 | 85 | 19 | -21.6 | YP_401652 | 5' arm 3' arm | ||
| 33469 | - | 26251 | 89 | 19 | -24.1 | 5' arm 3' arm | |||
| 33610 | - | 155355 | 90 | 19 | -24.6 | YP_401710 | 5' arm 3' arm | ||
| 33592 | - | 136898 | 85 | 19 | -23.5 | YP_401705 | 5' arm 3' arm | ||
| 33351 | + | 107450 | 90 | 19 | -20.6 | YP_401685 | 5' arm 3' arm | ||
| 33500 | - | 50722 | 89 | 19 | -23.9 | YP_401652 | 5' arm 3' arm | ||
| 33345 | + | 101110 | 90 | 19 | -21.8 | YP_401681 | 5' arm 3' arm | ||
| 33583 | - | 128100 | 90 | 19 | -22.8 | YP_401699 | 5' arm 3' arm | ||
| 33633 | - | 171608 | 88 | 19 | -24 | 5' arm 3' arm | |||
| 33570 | - | 116766 | 85 | 19.5 | -23.5 | YP_401693 | 5' arm 3' arm | ||
| 33596 | - | 139869 | 90 | 19.5 | -26.6 | 5' arm 3' arm | |||
| 33423 | + | 169580 | 82 | 19.5 | -21.4 | 5' arm 3' arm | |||
| 33575 | - | 121917 | 89 | 19.5 | -24.7 | YP_401697 | 5' arm 3' arm | ||
| 33355 | + | 116411 | 90 | 19.5 | -27.6 | YP_401693 | 5' arm 3' arm | ||
| 33562 | - | 109779 | 90 | 19.5 | -23.8 | YP_401687 | 5' arm 3' arm | ||
| 33559 | - | 109149 | 83 | 19.5 | -25.3 | YP_401687 | 5' arm 3' arm | ||
| 33329 | + | 74202 | 89 | 19.5 | -19.8 | YP_401662 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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