miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
57790931 NC_006623.1 Gallid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31359 - 12089 85 19 -26.2 5' arm      3' arm
31313 + 12164 89 20.5 -25.7 5' arm      3' arm
31304 + 1904 82 24.5 -25.6 5' arm      3' arm
31327 + 114421 86 22 -24.8 5' arm      3' arm
31399 - 147304 86 22 -24.8 5' arm      3' arm
31362 - 20063 88 20.5 -24.7 YP_182342 5' arm      3' arm
31389 - 137341 88 25.5 -24 YP_182408 5' arm      3' arm
31388 - 137069 88 23 -24 YP_182408 5' arm      3' arm
31386 - 134056 90 20 -23.8 YP_182406 5' arm      3' arm
31309 + 2805 90 24.5 -23.6 5' arm      3' arm
31367 - 112602 88 28.5 -23.6 5' arm      3' arm
31376 - 121874 89 20 -23.6 5' arm      3' arm
31361 - 19848 90 23.5 -23.6 YP_182342 5' arm      3' arm
31343 + 139851 89 20 -23.6 5' arm      3' arm
31310 + 4314 90 22.5 -23.5 5' arm      3' arm
31306 + 2310 86 23.5 -23.5 5' arm      3' arm
31320 + 65806 90 21 -23.39 YP_182366 5' arm      3' arm
31395 - 145264 90 25.5 -23.3 YP_182397 5' arm      3' arm
31331 + 116461 90 25.5 -23.3 YP_182397 5' arm      3' arm
31384 - 131702 90 22.5 -23.2 YP_182404 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.