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GenBank Identifier | RefSeq Acc. | Name |
50345893 | NC_002229.2 | Gallid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF![]() |
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8692 | - | 144068 | 90 | 19 | -23.8 | YP_053234 | 5' arm 3' arm | ||
8654 | + | 170226 | 88 | 21.5 | -25.5 | YP_053234 | 5' arm 3' arm | ||
8697 | - | 167824 | 89 | 22.5 | -31.7 | YP_053234 | 5' arm 3' arm | ||
8648 | + | 144929 | 89 | 22.5 | -31.7 | YP_053234 | 5' arm 3' arm | ||
8653 | + | 168685 | 90 | 19 | -23.8 | YP_053222 | 5' arm 3' arm | ||
8691 | - | 142527 | 88 | 21.5 | -25.5 | YP_053222 | 5' arm 3' arm | ||
8694 | - | 147963 | 90 | 19 | -20.6 | YP_053222 | 5' arm 3' arm | ||
8651 | + | 164790 | 90 | 19 | -20.6 | YP_053222 | 5' arm 3' arm | ||
8696 | - | 164695 | 89 | 23.5 | -21.3 | YP_053222 | 5' arm 3' arm | ||
8698 | - | 169387 | 90 | 21.5 | -19.7 | YP_053222 | 5' arm 3' arm | ||
8647 | + | 143366 | 90 | 21.5 | -19.7 | YP_053222 | 5' arm 3' arm | ||
8649 | + | 148058 | 89 | 23.5 | -21.3 | YP_053222 | 5' arm 3' arm | ||
8685 | - | 137791 | 87 | 21.5 | -27.4 | NP_057836 | 5' arm 3' arm | ||
8614 | + | 311 | 90 | 24 | -27.4 | NP_057836 | 5' arm 3' arm | ||
8687 | - | 138365 | 90 | 24 | -27.4 | NP_057836 | 5' arm 3' arm | ||
8659 | - | 2579 | 89 | 30.5 | -25.6 | NP_057833 | 5' arm 3' arm | ||
8660 | - | 2668 | 89 | 25 | -22.6 | NP_057833 | 5' arm 3' arm | ||
8638 | + | 136008 | 89 | 25 | -22.6 | NP_057833 | 5' arm 3' arm | ||
8617 | + | 2629 | 90 | 22 | -20.3 | NP_057833 | 5' arm 3' arm | ||
8661 | - | 2805 | 87 | 26.5 | -31.6 | NP_057832 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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