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GenBank Identifier | RefSeq Acc. | Name |
50345893 | NC_002229.2 | Gallid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8697 | - | 167824 | 89 | 22.5 | -31.7 | YP_053234 | 5' arm 3' arm | ||
8641 | + | 138651 | 90 | 22.5 | -19.6 | 5' arm 3' arm | |||
8633 | + | 135050 | 90 | 23 | -26.3 | 5' arm 3' arm | |||
8665 | - | 3626 | 90 | 23 | -26.3 | 5' arm 3' arm | |||
8677 | - | 77308 | 90 | 23 | -26.9 | NP_057795 | 5' arm 3' arm | ||
8696 | - | 164695 | 89 | 23.5 | -21.3 | YP_053222 | 5' arm 3' arm | ||
8650 | + | 162096 | 87 | 23.5 | -22.5 | 5' arm 3' arm | |||
8649 | + | 148058 | 89 | 23.5 | -21.3 | YP_053222 | 5' arm 3' arm | ||
8695 | - | 150657 | 87 | 23.5 | -22.5 | 5' arm 3' arm | |||
8687 | - | 138365 | 90 | 24 | -27.4 | NP_057836 | 5' arm 3' arm | ||
8614 | + | 311 | 90 | 24 | -27.4 | NP_057836 | 5' arm 3' arm | ||
8636 | + | 135626 | 90 | 24 | -22.6 | NP_057832 | 5' arm 3' arm | ||
8662 | - | 3050 | 90 | 24 | -22.6 | NP_057745 | 5' arm 3' arm | ||
8635 | + | 135509 | 89 | 24.5 | -25.2 | 5' arm 3' arm | |||
8634 | + | 135380 | 89 | 24.5 | -26.5 | 5' arm 3' arm | |||
8663 | - | 3167 | 89 | 24.5 | -25.2 | 5' arm 3' arm | |||
8681 | - | 131956 | 89 | 24.5 | -25.6 | 5' arm 3' arm | |||
8620 | + | 6720 | 89 | 24.5 | -25.6 | 5' arm 3' arm | |||
8619 | + | 6196 | 88 | 24.5 | -19.9 | 5' arm 3' arm | |||
8664 | - | 3296 | 89 | 24.5 | -26.5 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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