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GenBank Identifier | RefSeq Acc. | Name |
50345893 | NC_002229.2 | Gallid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8630 | + | 132870 | 88 | 27.5 | -26.6 | NP_057748 | 5' arm 3' arm | ||
8627 | + | 132393 | 87 | 27.5 | -31.4 | 5' arm 3' arm | |||
8628 | + | 132586 | 87 | 28 | -23.5 | 5' arm | |||
8629 | + | 132735 | 87 | 29 | -29.8 | NP_057748 | 5' arm 3' arm | ||
8695 | - | 150657 | 87 | 23.5 | -22.5 | 5' arm 3' arm | |||
8694 | - | 147963 | 90 | 19 | -20.6 | YP_053222 | 5' arm 3' arm | ||
8691 | - | 142527 | 88 | 21.5 | -25.5 | YP_053222 | 5' arm 3' arm | ||
8693 | - | 144857 | 90 | 19.5 | -24.2 | 5' arm 3' arm | |||
8692 | - | 144068 | 90 | 19 | -23.8 | YP_053234 | 5' arm 3' arm | ||
8690 | - | 140241 | 89 | 25.5 | -25.9 | 5' arm 3' arm | |||
8689 | - | 140006 | 90 | 25.5 | -23.8 | 5' arm 3' arm | |||
8697 | - | 167824 | 89 | 22.5 | -31.7 | YP_053234 | 5' arm 3' arm | ||
8696 | - | 164695 | 89 | 23.5 | -21.3 | YP_053222 | 5' arm 3' arm | ||
8704 | - | 173956 | 85 | 19 | -22.9 | 5' arm 3' arm | |||
8702 | - | 173154 | 90 | 20.5 | -35.1 | 5' arm 3' arm | |||
8703 | - | 173642 | 87 | 20.5 | -21.8 | 5' arm 3' arm | |||
8698 | - | 169387 | 90 | 21.5 | -19.7 | YP_053222 | 5' arm 3' arm | ||
8699 | - | 172476 | 88 | 25 | -25 | 3' arm | |||
8700 | - | 172598 | 86 | 26.5 | -20.7 | 3' arm | |||
8658 | - | 202 | 89 | 19.5 | -22.9 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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