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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10981 | - | 61010 | 89 | 20 | -20.3 | NP_597953 | 5' arm 3' arm | ||
| 10980 | - | 60870 | 89 | 25.5 | -23.2 | NP_597953 | 5' arm 3' arm | ||
| 10916 | + | 194449 | 88 | 19 | -23.9 | NP_116485 | 5' arm 3' arm | ||
| 11147 | - | 194491 | 90 | 21 | -23.9 | NP_116485 | 5' arm 3' arm | ||
| 10915 | + | 194117 | 90 | 19 | -27.4 | NP_116484 | 5' arm 3' arm | ||
| 11146 | - | 194013 | 87 | 19.5 | -24.3 | NP_116484 | 5' arm 3' arm | ||
| 11145 | - | 193881 | 85 | 21.5 | -24.9 | NP_116483 | 5' arm 3' arm | ||
| 10914 | + | 193466 | 86 | 23.5 | -21.9 | NP_116483 | 5' arm 3' arm | ||
| 11143 | - | 192220 | 88 | 20 | -20 | NP_116481 | 5' arm 3' arm | ||
| 10908 | + | 188830 | 86 | 22.5 | -29.7 | NP_116479 | 5' arm 3' arm | ||
| 11141 | - | 188916 | 90 | 21.5 | -22 | NP_116479 | 5' arm 3' arm | ||
| 10909 | + | 189104 | 90 | 19 | -22.5 | NP_116479 | 5' arm 3' arm | ||
| 11140 | - | 187607 | 86 | 19.5 | -30.4 | NP_116478 | 5' arm 3' arm | ||
| 10905 | + | 187315 | 90 | 21.5 | -19.9 | NP_116478 | 5' arm 3' arm | ||
| 10904 | + | 187180 | 85 | 20 | -23.6 | NP_116478 | 5' arm 3' arm | ||
| 10901 | + | 185026 | 87 | 20.5 | -23 | NP_116477 | 5' arm 3' arm | ||
| 11139 | - | 185017 | 84 | 19 | -26.4 | NP_116477 | 5' arm 3' arm | ||
| 11138 | - | 184351 | 90 | 20 | -22.3 | NP_116476 | 5' arm 3' arm | ||
| 10900 | + | 184397 | 89 | 25.5 | -25.4 | NP_116476 | 5' arm 3' arm | ||
| 11136 | - | 182940 | 90 | 22 | -26 | NP_116475 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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