miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630966 NC_001973.1 Lymantria dispar nucleopolyhedrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7847 + 160445 90 19.5 -25.4 NP_047800 5' arm      3' arm
8070 - 160143 90 19.5 -22.9 NP_047800 5' arm      3' arm
7846 + 159000 85 19.5 -21.7 NP_047798 5' arm      3' arm
8069 - 159484 90 21.5 -23.3 NP_047798 5' arm      3' arm
7893 - 34568 89 21 -21.4 NP_047798 5' arm      3' arm
8068 - 159174 89 24.5 -32.9 NP_047798 5' arm      3' arm
7837 + 156131 89 21.5 -22.7 NP_047797 5' arm      3' arm
8060 - 156033 90 23.5 -29.7 NP_047797 5' arm      3' arm
7841 + 156968 87 19.5 -32.5 NP_047797 5' arm      3' arm
8059 - 155896 89 21.5 -19.4 NP_047797 5' arm      3' arm
8062 - 156586 89 19.5 -21.6 NP_047797 5' arm      3' arm
7838 + 156249 84 19.5 -19.5 NP_047797 5' arm      3' arm
7843 + 158070 90 21.5 -24.5 NP_047797 5' arm      3' arm
7842 + 157574 90 21 -20.9 NP_047797 5' arm      3' arm
7840 + 156497 89 27 -36.3 NP_047797 5' arm      3' arm
8061 - 156408 90 21 -20.6 NP_047797 5' arm      3' arm
8063 - 156717 87 22.5 -28.3 NP_047797 5' arm      3' arm
7836 + 156018 86 19 -25.7 NP_047797 5' arm      3' arm
8064 - 157116 90 22.5 -24.4 NP_047797 5' arm      3' arm
8065 - 157252 90 21.5 -25.4 NP_047797 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.