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GenBank Identifier | RefSeq Acc. | Name |
18138257 | NC_003349.1 | Helicoverpa zea single nucleocapsid nucleopolyhedrovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
12699 | + | 19044 | 90 | 21.5 | -22.6 | NP_542644 | 5' arm 3' arm | ||
12700 | + | 37308 | 88 | 20 | -28.7 | NP_542665 | 5' arm 3' arm | ||
12701 | + | 52368 | 88 | 21 | -22.2 | 5' arm 3' arm | |||
12702 | + | 73527 | 89 | 22 | -22 | NP_542706 | 5' arm 3' arm | ||
12703 | + | 88810 | 85 | 24.5 | -27.1 | NP_542722 | 5' arm 3' arm | ||
12704 | + | 104390 | 87 | 22 | -21.3 | NP_542737 | 5' arm 3' arm | ||
12705 | + | 116685 | 89 | 22.5 | -26.2 | NP_542750 | 5' arm 3' arm | ||
12706 | - | 35250 | 87 | 27.5 | -33.1 | 5' arm 3' arm | |||
12707 | - | 35882 | 86 | 24.5 | -20.8 | NP_542664 | 5' arm 3' arm | ||
12708 | - | 48593 | 89 | 19.5 | -25.9 | 5' arm 3' arm | |||
12709 | - | 82178 | 89 | 21 | -20.6 | NP_542714 | 5' arm 3' arm | ||
12710 | - | 82340 | 89 | 21 | -31.8 | NP_542714 | 5' arm 3' arm | ||
12711 | - | 100565 | 87 | 19 | -24.4 | NP_542732 | 5' arm 3' arm | ||
12712 | - | 113814 | 90 | 24 | -24.1 | NP_542747 | 5' arm 3' arm | ||
12713 | - | 120684 | 89 | 23.5 | -24.1 | NP_542755 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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