miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
28336	+	2726	87	20	-31.3			5' arm      3' arm
28335	+	2401	90	20	-22.5	YP_031580		5' arm      3' arm
28340	+	4258	89	21	-19.9	YP_031581		5' arm      3' arm
28334	+	2055	90	21	-32	YP_031580		5' arm      3' arm
28338	+	3592	89	22	-21.7	YP_031581		5' arm      3' arm
28351	+	13301	90	22	-33.6	YP_031587		5' arm      3' arm
28347	+	11903	90	21	-24	YP_031587		5' arm      3' arm
28363	+	22403	87	21.5	-20.6	YP_031597		5' arm      3' arm
28358	+	19837	90	21.5	-31.7			5' arm      3' arm
28361	+	21978	88	22	-25.9	YP_031597		5' arm      3' arm
28362	+	22228	89	23	-27.3	YP_031597		5' arm      3' arm
28364	+	22624	87	23.5	-19.4	YP_031597		5' arm      3' arm
28359	+	20150	90	24	-22.9	YP_031595		5' arm      3' arm
28356	+	16441	90	21	-33.3	YP_031590		5' arm      3' arm
28355	+	15850	90	21	-21.2	YP_031590		5' arm      3' arm
28350	+	13138	90	19	-19.71	YP_031587		5' arm      3' arm
28354	+	13903	90	20	-26.1	YP_031587		5' arm      3' arm
28349	+	12350	87	20.5	-24.5	YP_031587		5' arm      3' arm
28352	+	13681	89	21	-25.4	YP_031587		5' arm      3' arm
28348	+	12203	89	21	-25.8	YP_031587		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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