miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
638	-	13833	89	20.5	-20.1	AP_000506		5' arm      3' arm
660	-	35356	84	20	-20.1	AP_000533		5' arm      3' arm
656	-	31330	86	20.5	-20.2	AP_000527		5' arm      3' arm
654	-	27525	90	19.5	-20.2	AP_000518		5' arm      3' arm
629	-	5867	88	21	-20.2	AP_000503		5' arm      3' arm
655	-	27997	90	20	-20.3	AP_000519		5' arm      3' arm
642	-	17051	89	20.5	-20.5	AP_000509		5' arm      3' arm
605	+	4638	83	19.5	-20.7	AP_000502		5' arm      3' arm
615	+	10891	90	21	-21			5' arm      3' arm
643	-	17283	81	21.5	-21.1	AP_000509		5' arm      3' arm
623	+	24395	90	19	-21.3	AP_000515		5' arm      3' arm
606	+	4908	89	21.5	-22	AP_000502		5' arm      3' arm
640	-	15322	90	20.5	-22.5			5' arm      3' arm
616	+	13288	88	21	-22.5	AP_000506		5' arm      3' arm
658	-	33934	90	23	-22.8	AP_000529		5' arm      3' arm
630	-	6439	86	20	-22.8	AP_000503		5' arm      3' arm
610	+	6618	89	20	-23.3	AP_000503		5' arm      3' arm
601	+	1398	90	25.5	-23.4	AP_000498		5' arm      3' arm
647	-	22728	89	21	-23.4	AP_000514		5' arm      3' arm
624	+	25048	87	20.5	-23.4	AP_000515		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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