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GenBank Identifier | RefSeq Acc. | Name |
9627196 | NC_001541.1 | Cottontail rabbit papillomavirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
3266 | + | 558 | 87 | 21.5 | -26.01 | NP_077106 | 5' arm 3' arm | ||
3267 | - | 3324 | 90 | 20.5 | -26 | NP_077109 | 5' arm 3' arm | ||
3268 | - | 3800 | 89 | 20.5 | -23.5 | NP_077110 | 5' arm 3' arm | ||
3269 | - | 3947 | 90 | 19 | -21.9 | NP_077110 | 5' arm 3' arm | ||
3270 | - | 5064 | 88 | 21.5 | -29 | NP_077112 | 5' arm 3' arm | ||
3271 | - | 5464 | 89 | 24 | -23.2 | NP_077112 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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