miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1073	+	31028	89	21.5	-21.4	NP_050652		5' arm      3' arm
1072	+	30387	90	21	-23.3	NP_050651		5' arm      3' arm
1096	-	30160	86	25	-24.6	NP_050651		5' arm      3' arm
1071	+	29564	90	22.5	-27.4	NP_050650		5' arm      3' arm
1095	-	29425	89	22.5	-21	NP_050649		5' arm      3' arm
1069	+	28970	90	21	-28	NP_050649		5' arm      3' arm
1070	+	29064	90	23	-21.42	NP_050649		5' arm      3' arm
1094	-	28243	87	20.5	-21	NP_050648		5' arm      3' arm
1068	+	28170	85	19.5	-19.7	NP_050648		5' arm      3' arm
1067	+	27749	90	20	-21.7	NP_050648		5' arm      3' arm
1065	+	26908	89	21.5	-27.4	NP_050647		5' arm      3' arm
1066	+	27339	90	22	-27.1	NP_050647		5' arm      3' arm
1091	-	27207	88	22.5	-20.7	NP_050647		5' arm      3' arm
1092	-	27320	90	22.5	-23	NP_050647		5' arm      3' arm
1093	-	27653	83	20.5	-23.9	NP_050647		5' arm      3' arm
1062	+	25314	85	21	-22.5	NP_050646		5' arm      3' arm
1063	+	25421	88	20.5	-22.6	NP_050646		5' arm      3' arm
1064	+	25636	86	22	-22.5	NP_050646		5' arm      3' arm
1090	-	25591	88	20.5	-23.2	NP_050646		5' arm      3' arm
1089	-	24478	82	21.5	-21.3	NP_050646		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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