miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1069	+	28970	90	21	-28	NP_050649		5' arm      3' arm
1065	+	26908	89	21.5	-27.4	NP_050647		5' arm      3' arm
1071	+	29564	90	22.5	-27.4	NP_050650		5' arm      3' arm
1097	-	31018	88	21.5	-27.2			5' arm      3' arm
1066	+	27339	90	22	-27.1	NP_050647		5' arm      3' arm
1056	+	12190	89	21.5	-26.2	NP_050630		5' arm      3' arm
1080	-	17070	89	19.5	-25.5	NP_050634		5' arm      3' arm
1053	+	5329	89	20.5	-25.3	NP_050612		5' arm      3' arm
1096	-	30160	86	25	-24.6	NP_050651		5' arm      3' arm
1060	+	19763	84	21.5	-24.3	NP_050638		5' arm      3' arm
1061	+	23987	90	21	-24.3			5' arm      3' arm
1083	-	18866	90	22.5	-24.2	NP_050636		5' arm      3' arm
1093	-	27653	83	20.5	-23.9	NP_050647		5' arm      3' arm
1072	+	30387	90	21	-23.3	NP_050651		5' arm      3' arm
1086	-	21853	90	23	-23.21	NP_050643		5' arm      3' arm
1090	-	25591	88	20.5	-23.2	NP_050646		5' arm      3' arm
1092	-	27320	90	22.5	-23	NP_050647		5' arm      3' arm
1079	-	16242	88	21.5	-22.7	NP_050634		5' arm      3' arm
1063	+	25421	88	20.5	-22.6	NP_050646		5' arm      3' arm
1084	-	19025	90	20.5	-22.6	NP_050636		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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