miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1077	-	14874	86	22	-21.6	NP_050633		5' arm      3' arm
1076	-	14077	89	19.5	-20.6	NP_050632		5' arm      3' arm
1075	-	8752	90	21	-20.3	NP_050620		5' arm      3' arm
1074	-	8135	90	19	-19.9	NP_050619		5' arm      3' arm
1073	+	31028	89	21.5	-21.4	NP_050652		5' arm      3' arm
1072	+	30387	90	21	-23.3	NP_050651		5' arm      3' arm
1071	+	29564	90	22.5	-27.4	NP_050650		5' arm      3' arm
1070	+	29064	90	23	-21.42	NP_050649		5' arm      3' arm
1069	+	28970	90	21	-28	NP_050649		5' arm      3' arm
1068	+	28170	85	19.5	-19.7	NP_050648		5' arm      3' arm
1067	+	27749	90	20	-21.7	NP_050648		5' arm      3' arm
1066	+	27339	90	22	-27.1	NP_050647		5' arm      3' arm
1065	+	26908	89	21.5	-27.4	NP_050647		5' arm      3' arm
1064	+	25636	86	22	-22.5	NP_050646		5' arm      3' arm
1063	+	25421	88	20.5	-22.6	NP_050646		5' arm      3' arm
1062	+	25314	85	21	-22.5	NP_050646		5' arm      3' arm
1061	+	23987	90	21	-24.3			5' arm      3' arm
1060	+	19763	84	21.5	-24.3	NP_050638		5' arm      3' arm
1059	+	18974	87	20	-21.6	NP_050636		5' arm      3' arm
1058	+	17262	88	21	-19.4	NP_050634		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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