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GenBank Identifier | RefSeq Acc. | Name |
9633494 | NC_000929.1 | Enterobacteria phage Mu |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
1058 | + | 17262 | 88 | 21 | -19.4 | NP_050634 | 5' arm 3' arm | ||
1075 | - | 8752 | 90 | 21 | -20.3 | NP_050620 | 5' arm 3' arm | ||
1072 | + | 30387 | 90 | 21 | -23.3 | NP_050651 | 5' arm 3' arm | ||
1069 | + | 28970 | 90 | 21 | -28 | NP_050649 | 5' arm 3' arm | ||
1062 | + | 25314 | 85 | 21 | -22.5 | NP_050646 | 5' arm 3' arm | ||
1094 | - | 28243 | 87 | 20.5 | -21 | NP_050648 | 5' arm 3' arm | ||
1093 | - | 27653 | 83 | 20.5 | -23.9 | NP_050647 | 5' arm 3' arm | ||
1063 | + | 25421 | 88 | 20.5 | -22.6 | NP_050646 | 5' arm 3' arm | ||
1090 | - | 25591 | 88 | 20.5 | -23.2 | NP_050646 | 5' arm 3' arm | ||
1053 | + | 5329 | 89 | 20.5 | -25.3 | NP_050612 | 5' arm 3' arm | ||
1085 | - | 19231 | 89 | 20.5 | -20.7 | NP_050638 | 5' arm 3' arm | ||
1084 | - | 19025 | 90 | 20.5 | -22.6 | NP_050636 | 5' arm 3' arm | ||
1082 | - | 18685 | 88 | 20.5 | -19.7 | NP_050636 | 5' arm 3' arm | ||
1059 | + | 18974 | 87 | 20 | -21.6 | NP_050636 | 5' arm 3' arm | ||
1067 | + | 27749 | 90 | 20 | -21.7 | NP_050648 | 5' arm 3' arm | ||
1088 | - | 24113 | 89 | 20 | -22.1 | 5' arm 3' arm | |||
1081 | - | 18533 | 87 | 20 | -20.6 | NP_050636 | 5' arm 3' arm | ||
1080 | - | 17070 | 89 | 19.5 | -25.5 | NP_050634 | 5' arm 3' arm | ||
1068 | + | 28170 | 85 | 19.5 | -19.7 | NP_050648 | 5' arm 3' arm | ||
1054 | + | 10955 | 90 | 19.5 | -20.7 | NP_050627 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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