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GenBank Identifier | RefSeq Acc. | Name |
9627507 | NC_001609.1 | Bacteriophage P4 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
3472 | + | 5121 | 88 | 21 | -25.6 | NP_042036 | 5' arm 3' arm | ||
3473 | + | 5381 | 88 | 21.5 | -19.8 | NP_042036 | 5' arm 3' arm | ||
3474 | + | 5546 | 90 | 21 | -20 | NP_042036 | 5' arm 3' arm | ||
3475 | + | 6345 | 87 | 21 | -25.6 | NP_042036 | 5' arm 3' arm | ||
3476 | + | 6901 | 76 | 22 | -23.4 | 5' arm 3' arm | |||
3477 | + | 9723 | 89 | 19.5 | -25.6 | NP_042042 | 5' arm 3' arm | ||
3478 | - | 3816 | 90 | 19 | -21.5 | NP_042035 | 5' arm 3' arm | ||
3479 | - | 5288 | 87 | 21 | -20.1 | NP_042036 | 5' arm 3' arm | ||
3480 | - | 5592 | 90 | 23 | -25.4 | NP_042036 | 5' arm 3' arm | ||
3481 | - | 6155 | 87 | 20.5 | -22.8 | NP_042036 | 5' arm 3' arm | ||
3482 | - | 6340 | 88 | 22.5 | -26.5 | NP_042036 | 5' arm 3' arm | ||
3483 | - | 6924 | 89 | 21 | -25.2 | NP_042036 | 5' arm 3' arm | ||
3484 | - | 7853 | 88 | 21 | -28.5 | 5' arm 3' arm | |||
3485 | - | 8473 | 89 | 21 | -28.4 | NP_042040 | 5' arm 3' arm | ||
3486 | - | 10224 | 90 | 20.5 | -26 | NP_042042 | 5' arm 3' arm | ||
3487 | - | 10777 | 89 | 20 | -23.5 | NP_042043 | 5' arm 3' arm | ||
3488 | - | 11192 | 86 | 21 | -20.3 | NP_042044 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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