miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2326	+	97	85	26	-33.9			5' arm      3' arm
2365	-	178	85	20	-31.8			5' arm      3' arm
2341	+	10540	89	21	-30.7	NP_040595		5' arm      3' arm
2379	-	14845	88	19	-29.8	NP_040598		5' arm      3' arm
2376	-	10923	89	20	-29.7	NP_040595		5' arm      3' arm
2330	+	3412	89	21.5	-29.3	NP_040583		5' arm      3' arm
2331	+	3566	89	21	-29.1	NP_040583		5' arm      3' arm
2385	-	18391	87	24	-28.7	NP_040600		5' arm      3' arm
2369	-	3652	88	22.5	-28.6	NP_040583		5' arm      3' arm
2377	-	11419	88	19.5	-28.1	NP_040595		5' arm      3' arm
2391	-	44792	86	22.5	-27.2	NP_040643		5' arm      3' arm
2388	-	39110	90	21.5	-27.1	NP_040631		5' arm      3' arm
2370	-	4771	90	20.5	-27.1	NP_040584		5' arm      3' arm
2361	+	36332	90	21	-27	NP_040627		5' arm      3' arm
2350	+	14592	90	21.5	-27	NP_040598		5' arm      3' arm
2356	+	18594	84	22.5	-26.9	NP_040600		5' arm      3' arm
2392	-	46380	86	23.5	-26.3	NP_040646		5' arm      3' arm
2327	+	266	78	21	-26.2	NP_040580		5' arm      3' arm
2329	+	2478	90	21.5	-26.1	NP_040581		5' arm      3' arm
2384	-	17039	88	19	-25.7	NP_040600		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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