miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2378	-	14755	81	21.5	-19.4	NP_040598		5' arm      3' arm
2354	+	17389	89	21	-19.4	NP_040600		5' arm      3' arm
2336	+	5876	89	20	-19.6	NP_040586		5' arm      3' arm
2363	+	44780	89	23	-20			5' arm      3' arm
2375	-	10369	88	19	-20.1	NP_040594		5' arm      3' arm
2342	+	10752	89	20.5	-20.2	NP_040595		5' arm      3' arm
2380	-	14967	85	19.5	-20.3	NP_040599		5' arm      3' arm
2358	+	21779	90	23.5	-20.3	NP_040604		5' arm      3' arm
2381	-	16090	77	21.5	-20.7	NP_040600		5' arm      3' arm
2360	+	30832	79	19.5	-20.7	NP_040613		5' arm      3' arm
2347	+	13914	90	19	-20.8	NP_040597		5' arm      3' arm
2373	-	5616	89	20	-20.9	NP_040585		5' arm      3' arm
2346	+	13248	89	23	-21.1	NP_040596		5' arm      3' arm
2382	-	16499	90	21	-21.1	NP_040600		5' arm      3' arm
2383	-	16758	90	19.5	-21.1	NP_040600		5' arm      3' arm
2387	-	37829	89	24.5	-21.2	NP_040628		5' arm      3' arm
2390	-	43972	87	19	-21.2	NP_040642		5' arm      3' arm
2352	+	17139	83	19.5	-21.3	NP_040600		5' arm      3' arm
2367	-	3089	86	19	-21.4	NP_040583		5' arm      3' arm
2340	+	9581	89	22	-21.8	NP_040592		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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