miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2389	-	40390	87	21.5	-22.2	NP_040633		5' arm      3' arm
2353	+	17297	88	19	-22.21	NP_040600		5' arm      3' arm
2372	-	5468	89	21	-22.3	NP_040584		5' arm      3' arm
2333	+	4311	83	19	-22.6	NP_040583		5' arm      3' arm
2374	-	6477	89	21	-22.7	NP_040587		5' arm      3' arm
2343	+	10855	90	22	-22.9	NP_040595		5' arm      3' arm
2368	-	3399	82	20.5	-22.9	NP_040583		5' arm      3' arm
2328	+	1307	88	19.5	-22.9	NP_040581		5' arm      3' arm
2362	+	39881	90	19	-23.2	NP_040632		5' arm      3' arm
2334	+	4870	89	19.5	-23.2	NP_040584		5' arm      3' arm
2338	+	7068	89	19	-23.3	NP_040587		5' arm      3' arm
2344	+	11901	90	20.5	-23.3	NP_040595		5' arm      3' arm
2335	+	5641	84	19.5	-23.4	NP_040584		5' arm      3' arm
2348	+	14183	89	20	-23.7			5' arm      3' arm
2357	+	19476	90	24	-24	NP_040601		5' arm      3' arm
2386	-	27605	89	21.5	-24.1			5' arm      3' arm
2351	+	15692	88	21.5	-24.2	NP_040600		5' arm      3' arm
2366	-	1404	77	19.5	-24.3	NP_040581		5' arm      3' arm
2355	+	17576	90	20.5	-24.4	NP_040600		5' arm      3' arm
2332	+	3993	90	24	-24.4	NP_040583		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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