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| GenBank Identifier | RefSeq Acc. | Name |
| 40807285 | NC_001978.2 | Bacteriophage phi-C31 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 8225 | - | 41245 | 90 | 19 | -24.1 | NP_047976 | 5' arm 3' arm | ||
| 8154 | + | 41087 | 88 | 20 | -19.4 | NP_047976 | 5' arm 3' arm | ||
| 8153 | + | 40886 | 90 | 20.5 | -29.6 | NP_047975 | 5' arm 3' arm | ||
| 8223 | - | 40118 | 89 | 19 | -19.5 | NP_047974 | 5' arm 3' arm | ||
| 8151 | + | 39243 | 87 | 19 | -29.6 | NP_047974 | 5' arm 3' arm | ||
| 8219 | - | 38937 | 90 | 22.5 | -25.7 | NP_047974 | 5' arm 3' arm | ||
| 8218 | - | 38698 | 90 | 21.5 | -22.6 | NP_047974 | 5' arm 3' arm | ||
| 8220 | - | 39074 | 87 | 21.5 | -21.9 | NP_047974 | 5' arm 3' arm | ||
| 8150 | + | 38848 | 90 | 21 | -27 | NP_047974 | 5' arm 3' arm | ||
| 8221 | - | 39458 | 88 | 20.5 | -31.4 | NP_047974 | 5' arm 3' arm | ||
| 8224 | - | 40237 | 85 | 19 | -25.1 | NP_047974 | 5' arm 3' arm | ||
| 8222 | - | 40016 | 88 | 21.5 | -25.6 | NP_047974 | 5' arm 3' arm | ||
| 8149 | + | 38117 | 90 | 22 | -33.3 | NP_047973 | 5' arm 3' arm | ||
| 8217 | - | 37843 | 90 | 20.5 | -26 | NP_047972 | 5' arm 3' arm | ||
| 8148 | + | 37850 | 89 | 20 | -33.5 | NP_047972 | 5' arm 3' arm | ||
| 8216 | - | 37490 | 87 | 22.5 | -26.2 | NP_047971 | 5' arm 3' arm | ||
| 8146 | + | 36629 | 90 | 21 | -24.7 | NP_047970 | 5' arm 3' arm | ||
| 8145 | + | 36426 | 89 | 20 | -20.9 | NP_047970 | 5' arm 3' arm | ||
| 8144 | + | 36320 | 88 | 21 | -24.6 | NP_047970 | 5' arm 3' arm | ||
| 8143 | + | 36136 | 90 | 21 | -26.8 | NP_047968 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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