miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
40807285 NC_001978.2 Bacteriophage phi-C31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8119 + 25059 90 19 -20.2 5' arm      3' arm
8171 - 11732 87 19 -24.4 NP_047935 5' arm      3' arm
8125 + 26354 89 19 -20.2 NP_047955 5' arm      3' arm
8174 - 15555 86 19 -27 NP_047940 5' arm      3' arm
8224 - 40237 85 19 -25.1 NP_047974 5' arm      3' arm
8151 + 39243 87 19 -29.6 NP_047974 5' arm      3' arm
8138 + 33274 89 19 -22.1 NP_047962 5' arm      3' arm
8225 - 41245 90 19 -24.1 NP_047976 5' arm      3' arm
8134 + 30424 90 19 -22.62 NP_047957 5' arm      3' arm
8184 - 20525 89 19 -20.6 NP_047944 5' arm      3' arm
8108 + 21204 88 19 -20.8 NP_047944 5' arm      3' arm
8193 - 23033 87 19 -30.3 5' arm      3' arm
8159 - 5891 88 19 -25.9 NP_047927 5' arm      3' arm
8101 + 17812 88 19 -23.7 NP_047941 5' arm      3' arm
8096 + 14529 89 19 -24.9 NP_047938 5' arm      3' arm
8223 - 40118 89 19 -19.5 NP_047974 5' arm      3' arm
8076 + 5260 89 19.5 -23.1 NP_047927 5' arm      3' arm
8152 + 40624 89 19.5 -19.9 5' arm      3' arm
8113 + 22610 89 19.5 -25.4 NP_047946 5' arm      3' arm
8102 + 17943 90 19.5 -22.5 NP_047941 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.