miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
40807285 NC_001978.2 Bacteriophage phi-C31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8102 + 17943 90 19.5 -22.5 NP_047941 5' arm      3' arm
8191 - 22563 90 19.5 -22.1 NP_047946 5' arm      3' arm
8181 - 19385 88 19.5 -22.1 NP_047944 5' arm      3' arm
8110 + 21939 90 19.5 -24.7 NP_047946 5' arm      3' arm
8112 + 22321 89 19.5 -29.2 NP_047946 5' arm      3' arm
8113 + 22610 89 19.5 -25.4 NP_047946 5' arm      3' arm
8166 - 9132 88 19.5 -22.5 NP_047934 5' arm      3' arm
8189 - 21903 90 19.5 -19.9 NP_047946 5' arm      3' arm
8084 + 7880 90 19.5 -25.7 NP_047930 5' arm      3' arm
8083 + 7519 87 19.5 -28.2 NP_047930 5' arm      3' arm
8076 + 5260 89 19.5 -23.1 NP_047927 5' arm      3' arm
8157 - 5306 89 19.5 -29.8 NP_047927 5' arm      3' arm
8192 - 22918 89 19.5 -25.1 NP_047947 5' arm      3' arm
8152 + 40624 89 19.5 -19.9 5' arm      3' arm
8131 + 28041 88 19.5 -21.3 NP_047956 5' arm      3' arm
8197 - 26442 89 19.5 -21.4 NP_047955 5' arm      3' arm
8114 + 23220 88 19.5 -20.3 NP_047948 5' arm      3' arm
8160 - 5988 86 19.5 -20.4 NP_047927 5' arm      3' arm
8123 + 25798 89 19.5 -20.6 NP_047955 5' arm      3' arm
8214 - 35243 90 19.5 -24.2 NP_047967 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.