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GenBank Identifier | RefSeq Acc. | Name |
21427637 | NC_004014.1 | Sorghum chlorotic spot virus RNA 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15567 | + | 40 | 79 | 20.5 | -23.8 | 5' arm 3' arm | |||
15568 | + | 3286 | 90 | 23 | -22.7 | NP_659020 | 5' arm 3' arm | ||
15569 | + | 7 | 88 | 22 | -24 | 5' arm 3' arm | |||
15570 | + | 470 | 87 | 19.5 | -20.47 | NP_659022 | 5' arm 3' arm | ||
15571 | + | 726 | 89 | 23 | -27.4 | 5' arm 3' arm | |||
15572 | + | 1711 | 87 | 29 | -23.4 | NP_659023 | 5' arm 3' arm | ||
15573 | + | 1837 | 90 | 24.5 | -26.9 | NP_659023 | 5' arm 3' arm | ||
15574 | + | 2160 | 90 | 22 | -19.5 | NP_659023 | 5' arm 3' arm | ||
15575 | + | 2721 | 88 | 21 | -30.7 | NP_659024 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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