miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630638 NC_001916.1 Infectious pancreatic necrosis virus segment B

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7463 - 2253 86 23 -20.4 NP_047197 5' arm      3' arm
7462 - 1755 89 21.5 -20.8 NP_047197 5' arm      3' arm
7461 - 1452 75 22 -33.8 NP_047197 5' arm      3' arm
7460 - 1010 88 25.5 -26.4 NP_047197 5' arm      3' arm
7459 - 618 90 21.5 -23 NP_047197 5' arm      3' arm
7458 + 1711 89 19 -20.4 NP_047197 5' arm      3' arm
7457 + 923 88 22 -21.5 NP_047197 5' arm      3' arm
7456 - 2637 88 24.5 -25.3 NP_047196 5' arm      3' arm
7455 - 2305 90 19 -25.7 NP_047196 5' arm      3' arm
7454 - 2033 85 19.5 -19.7 NP_047196 5' arm      3' arm
7453 - 1565 87 19 -19.4 NP_047196 5' arm      3' arm
7452 - 1096 87 22 -26 NP_047196 5' arm      3' arm
7451 - 103 89 19 -28 5' arm      3' arm
7450 + 909 87 19 -24.6 NP_047196 5' arm      3' arm
7449 + 242 87 19 -24.6 NP_047196 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.