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GenBank Identifier | RefSeq Acc. | Name |
9629812 | NC_001846.1 | Murine hepatitis virus strain A59 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
6319 | + | 1416 | 84 | 27 | -26.4 | NP_068668 | 5' arm 3' arm | ||
6320 | + | 1731 | 90 | 21.5 | -25.3 | NP_068668 | 5' arm 3' arm | ||
6321 | + | 2250 | 90 | 25 | -26.7 | NP_045298 | 5' arm 3' arm | ||
6322 | + | 2762 | 89 | 25.5 | -22.5 | NP_045298 | 5' arm 3' arm | ||
6323 | + | 3420 | 87 | 20 | -22.3 | NP_045298 | 5' arm 3' arm | ||
6324 | + | 3787 | 89 | 23 | -21.5 | NP_068668 | 5' arm 3' arm | ||
6325 | + | 8034 | 86 | 23 | -25.3 | NP_045298 | 5' arm 3' arm | ||
6326 | + | 9511 | 88 | 22 | -21.6 | NP_045298 | 5' arm 3' arm | ||
6327 | + | 11046 | 90 | 21.5 | -19.5 | NP_045298 | 5' arm 3' arm | ||
6328 | + | 11560 | 90 | 19 | -19.4 | NP_045298 | 5' arm 3' arm | ||
6329 | + | 12477 | 90 | 22 | -22.1 | NP_045298 | 5' arm 3' arm | ||
6330 | + | 15190 | 88 | 21.5 | -25.8 | NP_068668 | 5' arm 3' arm | ||
6331 | + | 15574 | 89 | 23 | -23.4 | NP_068668 | 5' arm 3' arm | ||
6332 | + | 17183 | 90 | 24 | -20.4 | NP_068668 | 5' arm 3' arm | ||
6333 | + | 18226 | 85 | 20 | -20 | NP_068668 | 5' arm 3' arm | ||
6334 | + | 20782 | 85 | 22.5 | -20.9 | NP_068668 | 5' arm 3' arm | ||
6335 | + | 22096 | 80 | 19 | -24.9 | NP_068669 | 5' arm 3' arm | ||
6336 | + | 23989 | 90 | 25.5 | -21.6 | NP_045300 | 5' arm 3' arm | ||
6337 | + | 26657 | 79 | 20.5 | -25.5 | NP_045300 | 5' arm 3' arm | ||
6338 | + | 29462 | 90 | 20.5 | -22.7 | NP_045301 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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