miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629812 NC_001846.1 Murine hepatitis virus strain A59

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6319 + 1416 84 27 -26.4 NP_068668 5' arm      3' arm
6320 + 1731 90 21.5 -25.3 NP_068668 5' arm      3' arm
6321 + 2250 90 25 -26.7 NP_045298 5' arm      3' arm
6322 + 2762 89 25.5 -22.5 NP_045298 5' arm      3' arm
6323 + 3420 87 20 -22.3 NP_045298 5' arm      3' arm
6324 + 3787 89 23 -21.5 NP_068668 5' arm      3' arm
6325 + 8034 86 23 -25.3 NP_045298 5' arm      3' arm
6326 + 9511 88 22 -21.6 NP_045298 5' arm      3' arm
6327 + 11046 90 21.5 -19.5 NP_045298 5' arm      3' arm
6328 + 11560 90 19 -19.4 NP_045298 5' arm      3' arm
6329 + 12477 90 22 -22.1 NP_045298 5' arm      3' arm
6330 + 15190 88 21.5 -25.8 NP_068668 5' arm      3' arm
6331 + 15574 89 23 -23.4 NP_068668 5' arm      3' arm
6332 + 17183 90 24 -20.4 NP_068668 5' arm      3' arm
6333 + 18226 85 20 -20 NP_068668 5' arm      3' arm
6334 + 20782 85 22.5 -20.9 NP_068668 5' arm      3' arm
6335 + 22096 80 19 -24.9 NP_068669 5' arm      3' arm
6336 + 23989 90 25.5 -21.6 NP_045300 5' arm      3' arm
6337 + 26657 79 20.5 -25.5 NP_045300 5' arm      3' arm
6338 + 29462 90 20.5 -22.7 NP_045301 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.